Package org.snpeff.snpEffect.testCases.unity

Class TestCasesSpliceSite

java.lang.Object

org.snpeff.snpEffect.testCases.unity.TestCasesBase

org.snpeff.snpEffect.testCases.unity.TestCasesSpliceSite

public class TestCasesSpliceSite
extends TestCasesBase

Test Splice sites variants

Author:

pcingola

Field Summary

Fields

Modifier and Type	Field	Description
static int	N

Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase

addUtrs, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, transcript, verbose

Constructor Summary

Constructors

Constructor	Description
TestCasesSpliceSite()

Method Summary

Modifier and Type	Method	Description
protected void	init()
void	test_01()

Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase

after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, prependSequenceToFirstExon, showTranscripts

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

N

public static int N

Constructor Detail

TestCasesSpliceSite

public TestCasesSpliceSite()

Method Detail

init

protected void init()

Overrides:

init in class TestCasesBase

test_01

public void test_01()