TestCasesHgvs (Snp Effect 4.3t API)

java.lang.Object
- org.snpeff.snpEffect.testCases.unity.TestCasesBase
- - org.snpeff.snpEffect.testCases.unity.TestCasesHgvs

public class TestCasesHgvs
extends TestCasesBase

Test case for basic HGV annotaions

Field Summary
- Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
  addUtrs, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, transcript, verbose

Constructor Summary

Constructors
Constructor Description

TestCasesHgvs()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`test_01()`	Test case: Use 1-letter AA change
`void`	`test_02()`	Test case: Use transcript ID
`void`	`test_03()`	Test case: Use old HGVS.C nomenclature E.g.

Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, init, initRand, initSnpEffPredictor, initSnpEffPredictor, prependSequenceToFirstExon, showTranscripts

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - TestCasesHgvs
```
public TestCasesHgvs()
```
- Method Detail
  - test_01
```
public void test_01()
```
    Test case: Use 1-letter AA change
  - test_02
```
public void test_02()
```
    Test case: Use transcript ID
  - test_03
```
public void test_03()
```
    Test case: Use old HGVS.C nomenclature E.g. : c.G123T instead of c.123G>T