Class TestCasesIntegrationMixedVariants
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMixedVariants
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public class TestCasesIntegrationMixedVariants extends java.lang.ObjectTest mixed variants- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationMixedVariants()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description voidcompareVep(java.lang.String genome, java.lang.String vcf)Compare with results from ENSEMBL's VEP to SnpEff Use VCF having VEP's resultsvoidtest_01_MixedVep()Make sure we can read VCF and parse variants without producing any exceptionvoidtest_02_MixedVep()voidtest_03_MixedVep()voidtest_04_MixedVep()voidtest_05_MixedVep()voidtest_06_MixedVep()voidtest_07_MixedVep()voidtest_08_MixedVep()voidtest_09_MixedVep()voidtest_11_ExonRank()
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Method Detail
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compareVep
public void compareVep(java.lang.String genome, java.lang.String vcf)Compare with results from ENSEMBL's VEP to SnpEff Use VCF having VEP's results
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test_01_MixedVep
public void test_01_MixedVep()
Make sure we can read VCF and parse variants without producing any exception
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test_02_MixedVep
public void test_02_MixedVep()
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test_03_MixedVep
public void test_03_MixedVep()
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test_04_MixedVep
public void test_04_MixedVep()
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test_05_MixedVep
public void test_05_MixedVep()
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test_06_MixedVep
public void test_06_MixedVep()
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test_07_MixedVep
public void test_07_MixedVep()
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test_08_MixedVep
public void test_08_MixedVep()
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test_09_MixedVep
public void test_09_MixedVep()
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test_11_ExonRank
public void test_11_ExonRank()
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