Package org.snpeff.snpEffect.commandLine.eff

Class WorkerEff

java.lang.Object

org.snpeff.akka.ConcurrentActor

org.snpeff.akka.Worker<VcfEntry,java.lang.String>

org.snpeff.akka.vcfStr.WorkerVcfStr

org.snpeff.snpEffect.commandLine.eff.WorkerEff

All Implemented Interfaces:

java.util.concurrent.Callable<Result<java.lang.String>>

public class WorkerEff
extends WorkerVcfStr

Worker agent for SnpEff 'eff' command

Author:

pablocingolani

Field Summary

Fields inherited from class org.snpeff.akka.Worker

id, message

Constructor Summary

Constructors

Constructor	Description
WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)

Method Summary

Modifier and Type	Method	Description
java.lang.String	calculate(VcfEntry vcfEntry)	Perform main calculation You must override this method to perform whatever calculation you want to implement

Methods inherited from class org.snpeff.akka.Worker

calculate, call, getId, setMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

WorkerEff

public WorkerEff(SnpEffCmdEff snpEffCmdEff,
                 SnpEffectPredictor snpEffectPredictor,
                 OutputFormatter outputFormatter,
                 IntervalForest filterIntervals)

Method Detail

calculate

public java.lang.String calculate(VcfEntry vcfEntry)

Description copied from class: Worker

Perform main calculation You must override this method to perform whatever calculation you want to implement

Overrides:

calculate in class WorkerVcfStr