Uses of Class org.snpeff.outputFormatter.OutputFormatter (Snp Effect 4.3t API)

Packages that use OutputFormatter
Package Description

org.snpeff.outputFormatter

org.snpeff.snpEffect.commandLine.eff

Uses of OutputFormatter in org.snpeff.outputFormatter

Subclasses of OutputFormatter in org.snpeff.outputFormatter
Modifier and Type	Class	Description
`class`	`BedAnnotationOutputFormatter`	Formats: Show all annotations that intersect the BED input file.
`class`	`BedOutputFormatter`	Formats output as BED file Referneces: http://genome.ucsc.edu/FAQ/FAQformat.html#format1
`class`	`VcfOutputFormatter`	Formats output as VCF

Methods in org.snpeff.outputFormatter that return OutputFormatter
Modifier and Type	Method	Description
`OutputFormatter`	OutputFormatter.`clone()`
`OutputFormatter`	VcfOutputFormatter.`clone()`

Uses of OutputFormatter in org.snpeff.snpEffect.commandLine.eff

Constructors in org.snpeff.snpEffect.commandLine.eff with parameters of type OutputFormatter
Constructor	Description
`MasterEff(int numWorkers, SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)`
`WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)`