search.hpp File Reference

Provides the public interface for search algorithms. More...

#include <seqan3/core/algorithm/configuration.hpp>
#include <seqan3/range/view/persist.hpp>
#include <seqan3/search/algorithm/detail/search.hpp>
#include <seqan3/search/fm_index/all.hpp>
#include <seqan3/std/algorithm>
#include <seqan3/std/ranges>

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Namespaces
	seqan3
	The main SeqAn3 namespace.

Functions
template<FmIndex index_t, typename queries_t , typename configuration_t >
auto	seqan3::search (queries_t &&queries, index_t const &index, configuration_t const &cfg)
	Search a query or a range of queries in an index. More...
template<FmIndex index_t, typename configuration_t >
auto	seqan3::search (char const *const queries, index_t const &index, configuration_t const &cfg)
template<FmIndex index_t, typename configuration_t >
auto	seqan3::search (std::initializer_list< char const *const > const &queries, index_t const &index, configuration_t const &cfg)
template<FmIndex index_t, typename queries_t >
auto	seqan3::search (queries_t &&queries, index_t const &index)
	Search a query or a range of queries in an index. It will not allow for any errors and will output all matches as positions in the text. More...
template<FmIndex index_t>
auto	seqan3::search (index_t const &index, char const *const queries)
template<FmIndex index_t>
auto	seqan3::search (std::initializer_list< char const *const > const &queries, index_t const &index)

Detailed Description

Provides the public interface for search algorithms.

Author

Christopher Pockrandt <christopher.pockrandt AT fu-berlin.de>