Alignment File

Provides files and formats for handling alignment data. More...

Collaboration diagram for Alignment File:

Classes
class	seqan3::alignment_file_header< ref_ids_type >
	Stores the header information of alignment files. More...
class	seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
	A class for reading alignment files, e.g. SAM, BAM, BLAST ... More...
struct	seqan3::alignment_file_input_default_traits< ref_sequences_t, ref_ids_t >
	The default traits for seqan3::alignment_file_input. More...
struct	seqan3::alignment_file_input_options< sequence_legal_alphabet >
	The options type defines various option members that influence the behaviour of all or some formats. More...
class	seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_char_type_, ref_ids_type >
	A class for writing alignment files, e.g. SAM, BAL, BLAST, ... More...
struct	seqan3::alignment_file_output_options
	The options type defines various option members that influence the behavior of all or some formats. More...
interface	seqan3::AlignmentFileInputFormat
	The generic concept for alignment file input formats. More...
interface	seqan3::AlignmentFileInputTraits
	The requirements a traits_type for seqan3::alignment_file_input must meet. More...
interface	seqan3::AlignmentFileOutputFormat
	The generic concept for alignment file out formats. More...
struct	seqan3::format_bam
	The BAM format. More...
struct	seqan3::format_sam
	The SAM format (tag). More...
struct	std::tuple_element< elem_no, seqan3::alignment_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > >
	Obtains the type of the specified element. More...
struct	std::tuple_size< seqan3::alignment_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > >
	Provides access to the number of elements in a tuple as a compile-time constant expression. More...

Detailed Description

Provides files and formats for handling alignment data.