format_sam.hpp File Reference

Provides the seqan3::format_sam tag and the seqan3::alignment_file_input_format and seqan3::alignment_file_output_format specialisation for this tag. More...

#include <iterator>
#include <string>
#include <vector>
#include <seqan3/core/char_operations/predicate.hpp>
#include <seqan3/core/concept/core_language.hpp>
#include <seqan3/core/concept/tuple.hpp>
#include <seqan3/core/detail/reflection.hpp>
#include <seqan3/core/detail/to_string.hpp>
#include <seqan3/core/type_traits/range.hpp>
#include <seqan3/core/type_traits/template_inspection.hpp>
#include <seqan3/io/alignment_file/detail.hpp>
#include <seqan3/io/alignment_file/header.hpp>
#include <seqan3/io/alignment_file/input_format_concept.hpp>
#include <seqan3/io/alignment_file/input_options.hpp>
#include <seqan3/io/alignment_file/output_format_concept.hpp>
#include <seqan3/io/alignment_file/output_options.hpp>
#include <seqan3/io/alignment_file/sam_tag_dictionary.hpp>
#include <seqan3/io/detail/ignore_output_iterator.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/stream/iterator.hpp>
#include <seqan3/range/decorator/gap_decorator.hpp>
#include <seqan3/range/detail/misc.hpp>
#include <seqan3/range/view/char_to.hpp>
#include <seqan3/range/view/istreambuf.hpp>
#include <seqan3/range/view/repeat_n.hpp>
#include <seqan3/range/view/slice.hpp>
#include <seqan3/range/view/take_until.hpp>
#include <seqan3/range/view/to_char.hpp>
#include <seqan3/std/algorithm>
#include <seqan3/std/charconv>
#include <seqan3/std/concepts>
#include <seqan3/std/ranges>
#include <seqan3/version.hpp>

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Classes
struct	seqan3::format_sam
	The SAM format (tag). More...

Namespaces
	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_sam tag and the seqan3::alignment_file_input_format and seqan3::alignment_file_output_format specialisation for this tag.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>