pappso::TimsXicExtractorInterface Class Reference

#include <timsxicextractorinterface.h>

Inheritance diagram for pappso::TimsXicExtractorInterface:

Public Member Functions
	TimsXicExtractorInterface (TimsData *mp_tims_data)
virtual	~TimsXicExtractorInterface ()
void	setXicExtractMethod (XicExtractMethod method)
	set the XIC extraction method More...

Protected Member Functions
virtual void	extractTimsXicList (std::vector< TimsXicStructure > &timsXicList, double rtRange) const =0
	extract XICs for given coordinates XICs are extracted given their coordinates : retention time target, mobility range, mz range More...

Protected Attributes
TimsData *	mp_timsData
XicExtractMethod	m_xicExtractMethod = XicExtractMethod::max

Detailed Description

Todo:

set of minimum functions to build XICs using Tims data

Definition at line 68 of file timsxicextractorinterface.h.

Constructor & Destructor Documentation

TimsXicExtractorInterface()

TimsXicExtractorInterface::TimsXicExtractorInterface

(

TimsData *

mp_tims_data

)

Definition at line 31 of file timsxicextractorinterface.cpp.

  : mp_timsData(mp_tims_data)
{

~TimsXicExtractorInterface()

TimsXicExtractorInterface::~TimsXicExtractorInterface ( )

virtual

Definition at line 36 of file timsxicextractorinterface.cpp.

{

Member Function Documentation

extractTimsXicList()

virtual void pappso::TimsXicExtractorInterface::extractTimsXicList ( std::vector< TimsXicStructure > &  timsXicList, double  rtRange  ) const

protectedpure virtual

extract XICs for given coordinates XICs are extracted given their coordinates : retention time target, mobility range, mz range

Parameters

timsXicList	list of TIMS XIC structures (XIC coordinates)
rtRange	the range in seconds that will be applied before and after XIC rtTarget to extract signal

Implemented in pappso::TimsDirectXicExtractor.

setXicExtractMethod()

void TimsXicExtractorInterface::setXicExtractMethod

(

XicExtractMethod

method

)

set the XIC extraction method

Definition at line 41 of file timsxicextractorinterface.cpp.

{
  m_xicExtractMethod = method;

References m_xicExtractMethod.

Member Data Documentation

m_xicExtractMethod

XicExtractMethod pappso::TimsXicExtractorInterface::m_xicExtractMethod = XicExtractMethod::max

protected

Definition at line 93 of file timsxicextractorinterface.h.

Referenced by pappso::TimsDirectXicExtractor::extractTimsXicList(), and setXicExtractMethod().

mp_timsData

TimsData* pappso::TimsXicExtractorInterface::mp_timsData

protected

Definition at line 92 of file timsxicextractorinterface.h.

Referenced by pappso::TimsDirectXicExtractor::extractTimsXicList().

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The documentation for this class was generated from the following files:

• pappsomspp/vendors/tims/xicextractor/timsxicextractorinterface.h
• pappsomspp/vendors/tims/xicextractor/timsxicextractorinterface.cpp