pappso::TimsMsFileReader Class Reference

#include <timsmsfilereader.h>

Inheritance diagram for pappso::TimsMsFileReader:

Public Member Functions
	TimsMsFileReader (const QString &file_name)
virtual	~TimsMsFileReader ()
virtual MzFormat	getFileFormat () override
virtual std::vector< MsRunIdCstSPtr >	getMsRunIds (const QString &run_prefix) override
MsRunReader *	selectMsRunReader (const QString &file_name) const

Private Member Functions
virtual std::size_t	initialize ()
Private Member Functions inherited from pappso::MsFileReader
	MsFileReader (const QString &file_name)
virtual	~MsFileReader ()

Additional Inherited Members
Private Attributes inherited from pappso::MsFileReader
QString	m_fileName
MzFormat	m_fileFormat = MzFormat::unknown

Detailed Description

Todo:

write docs

Definition at line 56 of file timsmsfilereader.h.

Constructor & Destructor Documentation

TimsMsFileReader()

pappso::TimsMsFileReader::TimsMsFileReader

(

const QString &

file_name

)

Definition at line 54 of file timsmsfilereader.cpp.

    {
      TimsData tims_data(m_fileName);
      m_fileFormat = MzFormat::brukerTims;

References pappso::brukerTims, pappso::MsFileReader::m_fileFormat, and pappso::MsFileReader::m_fileName.

~TimsMsFileReader()

pappso::TimsMsFileReader::~TimsMsFileReader ( )

virtual

Definition at line 62 of file timsmsfilereader.cpp.

    {
      return 0;
    }

Member Function Documentation

getFileFormat()

MzFormat pappso::TimsMsFileReader::getFileFormat ( )

overridevirtual

Implements pappso::MsFileReader.

Definition at line 87 of file timsmsfilereader.cpp.

                                :" << ms_run_id.toString();

Referenced by pappso::MsFileAccessor::buildTimsMsRunReaderMs2SPtr(), and pappso::MsFileAccessor::getMsRunIds().

getMsRunIds()

std::vector< MsRunIdCstSPtr > pappso::TimsMsFileReader::getMsRunIds ( const QString &  run_prefix )

overridevirtual

Implements pappso::MsFileReader.

Definition at line 94 of file timsmsfilereader.cpp.

                                :" << ms_run_id.toString();
 
  // Finally make a shared pointer out of it and append it to the vector.
  ms_run_ids.push_back(std::make_shared<MsRunId>(ms_run_id));
 
  return ms_run_ids;
}
 
 
} // namespace pappso

Referenced by pappso::MsFileAccessor::buildTimsMsRunReaderMs2SPtr(), and pappso::MsFileAccessor::getMsRunIds().

initialize()

std::size_t pappso::TimsMsFileReader::initialize ( )

privatevirtual

Definition at line 68 of file timsmsfilereader.cpp.

{
  return m_fileFormat;
}
 
 
std::vector<MsRunIdCstSPtr>
TimsMsFileReader::getMsRunIds(const QString &run_prefix)
{
  std::vector<MsRunIdCstSPtr> ms_run_ids;
 
  if(!initialize())
    return ms_run_ids;

References pappso::MsFileReader::m_fileFormat.

selectMsRunReader()

MsRunReader* pappso::TimsMsFileReader::selectMsRunReader

(

const QString &

file_name

)

const

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The documentation for this class was generated from the following files:

• pappsomspp/msfile/timsmsfilereader.h
• pappsomspp/msfile/timsmsfilereader.cpp